Effective results for Selenomonas sp. oral taxon 137 str. F0430 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 47 proteins (3 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
879310.HMPREF9162_1731(PF00872)mitochondrial; (mitochondrial)
879310.HMPREF9162_1623(PF13541) (PF01078)
879310.HMPREF9162_0202PF00349 PF03727
879310.HMPREF9162_0030(PF13541) (PF01078)
879310.HMPREF9162_1677(PF13541) (PF01078)
879310.HMPREF9162_2333PF00349 PF03727
879310.HMPREF9162_1737(PF00872)(mitochondrial)
879310.HMPREF9162_0079(PF13541) (PF01078)
879310.HMPREF9162_0591(PF02527)not used
879310.HMPREF9162_0590(PF02527)
879310.HMPREF9162_1752(PF00872)
879310.HMPREF9162_2192(PF00872)
879310.HMPREF9162_2178(PF00872)
879310.HMPREF9162_1395(PF00872)
879310.HMPREF9162_1396(PF00872)
879310.HMPREF9162_0567(PF00872)
879310.HMPREF9162_0568(PF00872)
879310.HMPREF9162_1764(PF12646)
879310.HMPREF9162_1617(PF13844)
879310.HMPREF9162_1618(PF13844)
879310.HMPREF9162_2236(PF00872)
879310.HMPREF9162_0577(PF00872)
879310.HMPREF9162_0576(PF00872)
879310.HMPREF9162_0574(PF00872)not used
879310.HMPREF9162_0573(PF00872)
879310.HMPREF9162_1751(PF00872)
879310.HMPREF9162_0377PF11443
879310.HMPREF9162_0207(PF00872)
879310.HMPREF9162_0201(PF00872)
879310.HMPREF9162_0208(PF00872)not used
879310.HMPREF9162_2307(PF00872)
879310.HMPREF9162_2308(PF00872)
879310.HMPREF9162_1800(PF05167)
879310.HMPREF9162_1801(PF05167)
879310.HMPREF9162_1665(PF00476)
879310.HMPREF9162_0249(PF13844)
879310.HMPREF9162_0248(PF13844)
879310.HMPREF9162_0247(PF13844)
879310.HMPREF9162_0246(PF13844)
879310.HMPREF9162_2249(PF13844)
879310.HMPREF9162_1059(PF01078)
879310.HMPREF9162_1736(PF00872)
879310.HMPREF9162_1732(PF00872)
879310.HMPREF9162_1733(PF00872)
879310.HMPREF9162_0072(PF00476)
879310.HMPREF9162_0856(PF00476)
879310.HMPREF9162_1725(PF00476)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================