Effective results for Listeria ivanovii subsp. ivanovii PAM 55 (eggnog40)

Summary

Number of putative secreted proteins: 54
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 54 proteins (22 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
881621.LIV_1181PF02095 PF12799ER
881621.LIV_0805(PF13402) (PF03272)ER
881621.LIV_1077(PF10662)(mitochondrial)
881621.LIV_0330(PF16403)ER
881621.LIV_2052PF12799ER
881621.LIV_0353PF12799ER
881621.LIV_0352PF12799ER
881621.LIV_0354PF12799ER
881621.LIV_2501PF12799ER
881621.LIV_1185PF12799ER
881621.LIV_1187PF12799ER
881621.LIV_1182PF12799ER
881621.LIV_1188PF12799ER
881621.LIV_1621(PF00413)ER
881621.LIV_1994(PF06824)(mitochondrial)
881621.LIV_1178PF12799ER
881621.LIV_2099(PF09683)ER
881621.LIV_1143(PF10662)(mitochondrial); mitochondrial
881621.LIV_1574(PF00359)(ER)
881621.LIV_2372PF12799ER
881621.LIV_2578PF12799ER
881621.LIV_2753(PF16403)ER
881621.LIV_2631(PF16403)ER
881621.LIV_1217(PF00413)ER
881621.LIV_0073PF12799ER
881621.LIV_0070(PF00413)ER
881621.LIV_1690PF12799ER
881621.LIV_1619(PF00413)ER
881621.LIV_1183PF12799(plastid)
881621.LIV_0806(PF13402) (PF03272)
881621.LIV_2579PF00834(ER)
881621.LIV_0408(PF00359)
881621.LIV_0406(PF00359)
881621.LIV_0404PF00834
881621.LIV_2257(PF00359)
881621.LIV_0410PF00834
881621.LIV_1794PF00834
881621.LIV_2695(PF07653)
881621.LIV_2085(PF00359)
881621.LIV_2086(PF00359)
881621.LIV_0577(PF00359)
881621.LIV_0576(PF00359)
881621.LIV_0801(PF08950)
881621.LIV_0815(PF00359)
881621.LIV_0440(PF06824)
881621.LIV_2562(PF00359)
881621.LIV_2563(PF00359)
881621.LIV_2588(PF00359)
881621.LIV_2587(PF00359)
881621.LIV_2581PF00834
881621.LIV_0674PF00834
881621.LIV_0291(PF00359)
881621.LIV_0860(PF00359)
881621.LIV_2129(PF00359)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================