Effective results for Roseovarius nubinhibens ISM (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 36 proteins (15 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
89187.ISM_14570PF16350 (PF08669) (PF01571)(ER)
89187.ISM_10266PF16350 (PF08669) (PF01571)ER
89187.ISM_10261PF16350 (PF08669) (PF01571)ER
89187.ISM_03660PF16350 (PF08669) (PF01571)ER
89187.ISM_14465PF16350 (PF08669) (PF01571)(ER)
89187.ISM_02920PF16350 (PF08669) (PF01571)
89187.ISM_03220PF04733ER
89187.ISM_14575PF16350 (PF08669) (PF01571)
89187.ISM_02725PF16350 (PF08669) (PF01571)
89187.ISM_16865(PF12411)(ER)
89187.ISM_09150PF16350 (PF08669) (PF01571)
89187.ISM_04390PF16350 (PF08669) (PF01571)
89187.ISM_14100PF16350 (PF08669) (PF01571)
89187.ISM_02705PF16350 (PF08669) (PF01571)
89187.ISM_08450PF10712(ER)
89187.ISM_05565(PF01571) (PF08669)(mitochondrial)
89187.ISM_10571PF16350 (PF08669) (PF01571)
89187.ISM_16590(PF01571) (PF08669)
89187.ISM_09346(PF01571) (PF08669)
89187.ISM_00170(PF01571) (PF08669)
89187.ISM_15390(PF01571) (PF08669)
89187.ISM_05735(PF01571) (PF08669)
89187.ISM_08170(PF01571) (PF08669)
89187.ISM_12990(PF01571) (PF08669)
89187.ISM_15575(PF00625)(ER)
89187.ISM_09661(PF01571) (PF08669)
89187.ISM_07005(PF02485)plastid
89187.ISM_04300(PF01571) (PF08669)
89187.ISM_04535(PF11977)
89187.ISM_13655(PF09585)
89187.ISM_13650(PF09585)
89187.ISM_11755(PF09458)
89187.ISM_14935(PF00625)
89187.ISM_03645(PF12411)
89187.ISM_06230(PF00625)
89187.ISM_10206(PF02485)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================