Effective results for Lactobacillus farciminis KCTC 3681 = DSM 20184 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 45 proteins (1 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
936140.LfarK3_010100011594(PF02485)(mitochondrial)
936140.LfarK3_010100009141(PF01016)(mitochondrial)
936140.LfarK3_010100009066(PF03577)mitochondrial; (plastid)
936140.LfarK3_010100002489(PF00253)(mitochondrial)
936140.LfarK3_010100004372(PF16193) (PF12002)
936140.LfarK3_010100007466(PF16193) (PF12002)
936140.LfarK3_010100008816(PF16193) (PF12002)
936140.LfarK3_010100003492(PF13127)
936140.LfarK3_010100011589(PF02485)
936140.LfarK3_010100009650(PF08282)
936140.LfarK3_010100009655(PF08282)
936140.LfarK3_010100001337(PF06838)
936140.LfarK3_010100005895(PF01016)
936140.LfarK3_010100009405(PF03577)
936140.LfarK3_010100006556(PF08282)
936140.LfarK3_010100006394PF02037
936140.LfarK3_010100001892(PF00253)
936140.LfarK3_010100006496(PF08282)
936140.LfarK3_010100002932(PF08282)
936140.LfarK3_010100009465(PF08282)
936140.LfarK3_010100009460(PF08282)
936140.LfarK3_010100006851(PF08282)
936140.LfarK3_010100006100(PF01746)
936140.LfarK3_010100003512(PF03577)
936140.LfarK3_010100000690(PF08282)
936140.LfarK3_010100002699(PF00253)
936140.LfarK3_010100009585(PF08282)
936140.LfarK3_010100004237(PF08282)
936140.LfarK3_010100008261(PF08282)
936140.LfarK3_010100008996(PF06100)
936140.LfarK3_010100006861(PF08282)
936140.LfarK3_010100007781(PF00165)
936140.LfarK3_010100012418(PF03577)
936140.LfarK3_010100006095(PF01746)
936140.LfarK3_010100006881(PF08282)
936140.LfarK3_010100008306(PF08282)
936140.LfarK3_010100008226(PF08282)
936140.LfarK3_010100001167(PF03577)
936140.LfarK3_010100009965(PF08282)
936140.LfarK3_010100009830(PF06100)
936140.LfarK3_010100012433(PF03577)
936140.LfarK3_010100005850(PF06838)
936140.LfarK3_010100008376(PF08282)
936140.LfarK3_010100006866(PF08282)not used
936140.LfarK3_010100002614(PF08282)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================