Effective results for Shewanella sp. ANA-3 (eggnog40)

Summary

Number of putative secreted proteins: 706
- Predicted by EffectiveT3: 250 (high confidence), 263 (low confidence)
- Predicted by EffectiveCCBD: 35 within, 17 before, 44 behind expected region 25..70aa
- Predicted by T4SEpre: 125
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 24 proteins (1 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
94122.Shewana3_3304+(PF05922) (PF02225)(ER)
94122.Shewana3_3173++ER
94122.Shewana3_1408(>)+ER
94122.Shewana3_3545(PF05922) (PF02225)ER
94122.Shewana3_1690(PF05922) (PF02225)ER
94122.Shewana3_3691+(PF16983)(ER)
94122.Shewana3_0918+(ER)
94122.Shewana3_3177(>)(mitochondrial)
94122.Shewana3_4000+ER
94122.Shewana3_2512(>)ER
94122.Shewana3_1187+ER
94122.Shewana3_0923+ER
94122.Shewana3_2745(PF02225)ER
94122.Shewana3_2585(>)ER
94122.Shewana3_3584+ER
94122.Shewana3_3900+ER
94122.Shewana3_2363+ER; (ER)
94122.Shewana3_3168+ER
94122.Shewana3_3161+ER
94122.Shewana3_0809+ER
94122.Shewana3_0112+ER
94122.Shewana3_1889+(mitochondrial)
94122.Shewana3_3974+ER
94122.Shewana3_3480+ER
94122.Shewana3_3711+ER
94122.Shewana3_1448+(mitochondrial)
94122.Shewana3_3626(>)ER
94122.Shewana3_0725+ER
94122.Shewana3_0431(>)ER
94122.Shewana3_2534(>)ER
94122.Shewana3_3563+ER
94122.Shewana3_3362+ER; (ER)
94122.Shewana3_3142(PF02225)(ER)
94122.Shewana3_3148+(mitochondrial); plastid
94122.Shewana3_1239+ER
94122.Shewana3_0952(>)ER
94122.Shewana3_0383+ER
94122.Shewana3_1949+ER
94122.Shewana3_0898+ER
94122.Shewana3_0964+ER
94122.Shewana3_1163+(mitochondrial); plastid
94122.Shewana3_1160+(mitochondrial); (plastid)
94122.Shewana3_1544+ER
94122.Shewana3_3945+ER
94122.Shewana3_3941+(mitochondrial); plastid
94122.Shewana3_1613+ER
94122.Shewana3_1616+(ER)
94122.Shewana3_3541+ER
94122.Shewana3_3611+ER
94122.Shewana3_3729+ER
94122.Shewana3_2548(PF02225)ER
94122.Shewana3_4093(>)(mitochondrial)
94122.Shewana3_1595+(ER)
94122.Shewana3_2007+(mitochondrial); mitochondrial
94122.Shewana3_2133(<)ER
94122.Shewana3_3442+mitochondrial
94122.Shewana3_2531+ER
94122.Shewana3_2733+ER
94122.Shewana3_1364+ER
94122.Shewana3_1109+ER
94122.Shewana3_1580(PF04970)ER
94122.Shewana3_1585(>)ER
94122.Shewana3_1740(PF02225)ER
94122.Shewana3_2457(PF09127)ER
94122.Shewana3_2588+(ER)
94122.Shewana3_2583+(ER); (mitochondrial)
94122.Shewana3_3290(>)ER
94122.Shewana3_3276(>)(mitochondrial); mitochondrial
94122.Shewana3_0882+ER
94122.Shewana3_4073(<)ER
94122.Shewana3_4072+ER
94122.Shewana3_1826+(ER); (plastid)
94122.Shewana3_3643+ER
94122.Shewana3_2254+ER
94122.Shewana3_0699+ER
94122.Shewana3_0036+ER
94122.Shewana3_0528(PF05548)ER
94122.Shewana3_0831+ER
94122.Shewana3_0836(>)ER
94122.Shewana3_1014(>)ER
94122.Shewana3_1657(>)ER
94122.Shewana3_3254+ER
94122.Shewana3_3652(+)+(mitochondrial)
94122.Shewana3_0501+ER
94122.Shewana3_0680(<)ER
94122.Shewana3_3321+ER
94122.Shewana3_4053+ER
94122.Shewana3_1484(<)(ER)
94122.Shewana3_1669+mitochondrial; (mitochondrial)
94122.Shewana3_3797+(ER)
94122.Shewana3_2451+(ER)
94122.Shewana3_1327(>)ER
94122.Shewana3_2410(PF08487)ER; (ER)
94122.Shewana3_2896+(mitochondrial)
94122.Shewana3_2521+(mitochondrial)
94122.Shewana3_3301+(PF05922) (PF02225)
94122.Shewana3_3126+ER
94122.Shewana3_0797(PF02010) (PF02225)(mitochondrial)
94122.Shewana3_4036+(ER)
94122.Shewana3_0803+(mitochondrial)
94122.Shewana3_1443(PF05922) (PF02225)(ER)
94122.Shewana3_1045+mitochondrial
94122.Shewana3_3116+ER
94122.Shewana3_4027+ER
94122.Shewana3_0904+ER
94122.Shewana3_2433+ER
94122.Shewana3_2435(<)(ER)
94122.Shewana3_3924+(ER)
94122.Shewana3_1417+(mitochondrial); plastid
94122.Shewana3_3809+mitochondrial
94122.Shewana3_0644(>)ER; (ER)
94122.Shewana3_3258(<)mitochondrial
94122.Shewana3_1993+ER
94122.Shewana3_1422+(ER)
94122.Shewana3_0673(+)(mitochondrial)
94122.Shewana3_1188(+)(ER)
94122.Shewana3_2632(+)++
94122.Shewana3_2183(+)ER
94122.Shewana3_2252+(mitochondrial)
94122.Shewana3_0963(+)(mitochondrial); plastid
94122.Shewana3_0064(+)ER
94122.Shewana3_0119(+)(mitochondrial); mitochondrial
94122.Shewana3_1157(+)(ER)
94122.Shewana3_1149+(plastid)
94122.Shewana3_3562+(plastid)
94122.Shewana3_0609+(plastid)
94122.Shewana3_0137(+)mitochondrial; (mitochondrial)
94122.Shewana3_1394(+)ER
94122.Shewana3_3601(+)(ER)
94122.Shewana3_0705+(>)
94122.Shewana3_1389(+)(mitochondrial)
94122.Shewana3_1370+(plastid)
94122.Shewana3_3145+(mitochondrial)
94122.Shewana3_1431+(plastid)
94122.Shewana3_4081(+)ER
94122.Shewana3_0502(PF02225)(ER)
94122.Shewana3_2104(+)ER
94122.Shewana3_2854+(plastid)
94122.Shewana3_3859+(mitochondrial)
94122.Shewana3_3070++
94122.Shewana3_3769(+)(mitochondrial)
94122.Shewana3_1914(+)ER
94122.Shewana3_2933++
94122.Shewana3_0743(+)(mitochondrial)
94122.Shewana3_3434+ER; not used
94122.Shewana3_2543+(ER)
94122.Shewana3_2692+(>)
94122.Shewana3_2696(+)(ER)
94122.Shewana3_3506+(plastid)
94122.Shewana3_2875++
94122.Shewana3_2271+(mitochondrial)
94122.Shewana3_2306(+)(>)plastid
94122.Shewana3_3090+(plastid)
94122.Shewana3_2673(<)(ER)
94122.Shewana3_1333+plastid
94122.Shewana3_1332+plastid
94122.Shewana3_1331+(mitochondrial)
94122.Shewana3_2918++
94122.Shewana3_1060+(>)
94122.Shewana3_3405+(mitochondrial)
94122.Shewana3_3558+plastid
94122.Shewana3_1927++
94122.Shewana3_1256++
94122.Shewana3_2523+(plastid)
94122.Shewana3_3998(+)(ER); (mitochondrial)
94122.Shewana3_2550+(plastid)
94122.Shewana3_3825(+)mitochondrial; (mitochondrial)
94122.Shewana3_0231+(plastid)
94122.Shewana3_1347+(plastid)
94122.Shewana3_0331++
94122.Shewana3_1262(+)mitochondrial; (mitochondrial)
94122.Shewana3_1319(>)+
94122.Shewana3_1446(+)ER
94122.Shewana3_2060+(plastid)
94122.Shewana3_2339(PF03199) (PF03917)
94122.Shewana3_3754(+)ER
94122.Shewana3_2570(+)(ER)
94122.Shewana3_1307(>)(ER)
94122.Shewana3_0871(+)(mitochondrial)
94122.Shewana3_1695+(plastid)
94122.Shewana3_1058++
94122.Shewana3_3926+(plastid)
94122.Shewana3_3108+(plastid)
94122.Shewana3_0647+(mitochondrial)
94122.Shewana3_0007+(mitochondrial)
94122.Shewana3_1990(+)+(plastid)
94122.Shewana3_1424(+)(plastid)
94122.Shewana3_1421+
94122.Shewana3_1420+
94122.Shewana3_2644+
94122.Shewana3_1733(+)(>)
94122.Shewana3_3599+
94122.Shewana3_2510+
94122.Shewana3_2517+
94122.Shewana3_1031(>)
94122.Shewana3_3910+
94122.Shewana3_3913+
94122.Shewana3_3777+
94122.Shewana3_3773+
94122.Shewana3_3778+
94122.Shewana3_1749+
94122.Shewana3_0584+
94122.Shewana3_1852+
94122.Shewana3_0146(<)
94122.Shewana3_0413(<)
94122.Shewana3_0076+
94122.Shewana3_0072+
94122.Shewana3_4008+
94122.Shewana3_1942+
94122.Shewana3_1989+
94122.Shewana3_2749+
94122.Shewana3_1720+
94122.Shewana3_3589(>)
94122.Shewana3_2365+
94122.Shewana3_2368+
94122.Shewana3_2253+
94122.Shewana3_3167+
94122.Shewana3_3160(>)
94122.Shewana3_3010+
94122.Shewana3_3013+
94122.Shewana3_3521+
94122.Shewana3_0661(>)
94122.Shewana3_0599+
94122.Shewana3_0065+
94122.Shewana3_0068(+)(ER)
94122.Shewana3_1538+
94122.Shewana3_1883+
94122.Shewana3_0934+
94122.Shewana3_1086+
94122.Shewana3_1714+
94122.Shewana3_3976+
94122.Shewana3_3973+
94122.Shewana3_2171(+)(plastid)
94122.Shewana3_2176+
94122.Shewana3_2376+
94122.Shewana3_2280(>)
94122.Shewana3_2289+
94122.Shewana3_3393+
94122.Shewana3_3394+
94122.Shewana3_1449+
94122.Shewana3_3028(>)
94122.Shewana3_2404+
94122.Shewana3_2012(+)+
94122.Shewana3_0612+
94122.Shewana3_2068+
94122.Shewana3_0125+
94122.Shewana3_0434+
94122.Shewana3_1893+
94122.Shewana3_1145+
94122.Shewana3_2767+
94122.Shewana3_2760+
94122.Shewana3_3564+
94122.Shewana3_3968+
94122.Shewana3_3969+
94122.Shewana3_3495+
94122.Shewana3_3497+
94122.Shewana3_2389+
94122.Shewana3_3700+
94122.Shewana3_2811+
94122.Shewana3_2815(+)(plastid)
94122.Shewana3_2814+
94122.Shewana3_0359+
94122.Shewana3_2128+
94122.Shewana3_1069+
94122.Shewana3_2598+
94122.Shewana3_2599(+)plastid
94122.Shewana3_3758+
94122.Shewana3_0136+
94122.Shewana3_1399+
94122.Shewana3_0954(>)
94122.Shewana3_0955+
94122.Shewana3_1170+
94122.Shewana3_2978+
94122.Shewana3_1521+
94122.Shewana3_2770+
94122.Shewana3_2610+
94122.Shewana3_1603+
94122.Shewana3_2152+
94122.Shewana3_1609+
94122.Shewana3_2390+
94122.Shewana3_2395(>)
94122.Shewana3_2809(+)(plastid)
94122.Shewana3_0908+
94122.Shewana3_0631+
94122.Shewana3_2462(>)
94122.Shewana3_0708+
94122.Shewana3_0706+
94122.Shewana3_0098+
94122.Shewana3_0381+
94122.Shewana3_0384+
94122.Shewana3_1384+
94122.Shewana3_1168+
94122.Shewana3_2943+
94122.Shewana3_0103+
94122.Shewana3_1766(>)
94122.Shewana3_2019+
94122.Shewana3_2141+
94122.Shewana3_2973+
94122.Shewana3_1615+
94122.Shewana3_1619+
94122.Shewana3_2231+
94122.Shewana3_2234(+)(mitochondrial)
94122.Shewana3_2383+
94122.Shewana3_3612+
94122.Shewana3_3365+
94122.Shewana3_0714(+)(mitochondrial)
94122.Shewana3_1110(+)(mitochondrial)
94122.Shewana3_0397+
94122.Shewana3_3228(+)+
94122.Shewana3_0398+
94122.Shewana3_1282+
94122.Shewana3_0974+
94122.Shewana3_0973+
94122.Shewana3_0970(+)(mitochondrial)
94122.Shewana3_1114+
94122.Shewana3_1111+
94122.Shewana3_1576+
94122.Shewana3_1593+
94122.Shewana3_1596+
94122.Shewana3_1757+
94122.Shewana3_2005(+)(ER)
94122.Shewana3_0306+
94122.Shewana3_1625PF01536
94122.Shewana3_1622+
94122.Shewana3_2131+
94122.Shewana3_3995(+)(ER)
94122.Shewana3_3449(+)(mitochondrial)
94122.Shewana3_3531(>)
94122.Shewana3_2223(+)(mitochondrial)
94122.Shewana3_2987+
94122.Shewana3_3284+
94122.Shewana3_3286+
94122.Shewana3_3266+
94122.Shewana3_1964(>)
94122.Shewana3_0401+
94122.Shewana3_0369+
94122.Shewana3_0367+
94122.Shewana3_1363(<)
94122.Shewana3_2565(<)
94122.Shewana3_0989+
94122.Shewana3_2924+
94122.Shewana3_1581+
94122.Shewana3_2032(+)+
94122.Shewana3_3459+
94122.Shewana3_2856+
94122.Shewana3_3856+
94122.Shewana3_3438+
94122.Shewana3_2976+
94122.Shewana3_3271+
94122.Shewana3_3275+
94122.Shewana3_3278+
94122.Shewana3_0778+
94122.Shewana3_1912+
94122.Shewana3_2656+
94122.Shewana3_0176+
94122.Shewana3_1829+
94122.Shewana3_1822+
94122.Shewana3_1827+
94122.Shewana3_1824+
94122.Shewana3_2932+
94122.Shewana3_1002+
94122.Shewana3_2447(+)(<)
94122.Shewana3_2842+
94122.Shewana3_3861(<)
94122.Shewana3_2209+
94122.Shewana3_2207+
94122.Shewana3_1755+
94122.Shewana3_3242+
94122.Shewana3_3089+
94122.Shewana3_3648(>)
94122.Shewana3_0347+
94122.Shewana3_4060+
94122.Shewana3_0524+
94122.Shewana3_0529+
94122.Shewana3_4121+
94122.Shewana3_1951+
94122.Shewana3_1344+
94122.Shewana3_0839+
94122.Shewana3_1010+
94122.Shewana3_2475+
94122.Shewana3_0893(+)(mitochondrial)
94122.Shewana3_3504+
94122.Shewana3_2059(+)(mitochondrial)
94122.Shewana3_2439+
94122.Shewana3_2876(PF09127)
94122.Shewana3_3893+
94122.Shewana3_3897+
94122.Shewana3_3251+
94122.Shewana3_1938+
94122.Shewana3_1931+
94122.Shewana3_1934+
94122.Shewana3_1937+
94122.Shewana3_1936+
94122.Shewana3_2445+
94122.Shewana3_0350(+)+
94122.Shewana3_0358+
94122.Shewana3_1806(PF08487)
94122.Shewana3_1246+
94122.Shewana3_1336+
94122.Shewana3_1798(PF04970)
94122.Shewana3_1557+
94122.Shewana3_0825+
94122.Shewana3_1556+
94122.Shewana3_0828+
94122.Shewana3_0829+
94122.Shewana3_2687(>)
94122.Shewana3_1480+
94122.Shewana3_2974+
94122.Shewana3_2975(>)
94122.Shewana3_2467+
94122.Shewana3_2465+
94122.Shewana3_2986+
94122.Shewana3_2268(+)(ER)
94122.Shewana3_2260(+)+
94122.Shewana3_3311+
94122.Shewana3_3316+
94122.Shewana3_3400+
94122.Shewana3_0697+
94122.Shewana3_2310+
94122.Shewana3_1923+
94122.Shewana3_1920+
94122.Shewana3_0323(<)
94122.Shewana3_0328+
94122.Shewana3_1817+
94122.Shewana3_4042+
94122.Shewana3_1253+
94122.Shewana3_1257+
94122.Shewana3_1323+
94122.Shewana3_0256+
94122.Shewana3_0814+
94122.Shewana3_1075(>)
94122.Shewana3_4106+
94122.Shewana3_1473+
94122.Shewana3_1673+
94122.Shewana3_1670+
94122.Shewana3_1784(PF02460)
94122.Shewana3_2075+
94122.Shewana3_2899+
94122.Shewana3_2255(+)(mitochondrial)
94122.Shewana3_3780+
94122.Shewana3_3234+
94122.Shewana3_3232+
94122.Shewana3_3824+
94122.Shewana3_3125(+)(ER)
94122.Shewana3_2566(+)(plastid)
94122.Shewana3_1224+
94122.Shewana3_0335+
94122.Shewana3_4035+
94122.Shewana3_1804+
94122.Shewana3_1266+
94122.Shewana3_0808+
94122.Shewana3_2668(>)
94122.Shewana3_2758+
94122.Shewana3_2794+
94122.Shewana3_2795+
94122.Shewana3_1682+
94122.Shewana3_2407(PF02225)
94122.Shewana3_1047+
94122.Shewana3_2244+
94122.Shewana3_1355(>)
94122.Shewana3_2990+
94122.Shewana3_3936(>)
94122.Shewana3_3759+
94122.Shewana3_2038+
94122.Shewana3_2331(PF05706)
94122.Shewana3_3687(>)
94122.Shewana3_3111+
94122.Shewana3_4136+
94122.Shewana3_0498+
94122.Shewana3_4013+
94122.Shewana3_1870(<)
94122.Shewana3_1873+
94122.Shewana3_0017(+)+
94122.Shewana3_4131(<)
94122.Shewana3_0274+
94122.Shewana3_0878+
94122.Shewana3_0875(+)(plastid)
94122.Shewana3_3432+
94122.Shewana3_2345+
94122.Shewana3_1996+
94122.Shewana3_3320+
94122.Shewana3_0166+
94122.Shewana3_3325+
94122.Shewana3_4021+
94122.Shewana3_3431+
94122.Shewana3_3105+
94122.Shewana3_3339+
94122.Shewana3_0459+
94122.Shewana3_3805+
94122.Shewana3_4123+
94122.Shewana3_0319+
94122.Shewana3_1845+
94122.Shewana3_1847+
94122.Shewana3_4010+
94122.Shewana3_1999+
94122.Shewana3_1994+
94122.Shewana3_1520+
94122.Shewana3_0866+
94122.Shewana3_1517+
94122.Shewana3_1515+
94122.Shewana3_3622(+)(<)
94122.Shewana3_1209(+)+
94122.Shewana3_2426(+)
94122.Shewana3_3911(+)
94122.Shewana3_3356(+)
94122.Shewana3_3359(+)
94122.Shewana3_1403(+)
94122.Shewana3_0451(+)
94122.Shewana3_0298(+)
94122.Shewana3_2107(+)
94122.Shewana3_0857(+)
94122.Shewana3_0858(+)
94122.Shewana3_1181(+)
94122.Shewana3_0929(+)
94122.Shewana3_2638(+)
94122.Shewana3_2160(+)
94122.Shewana3_2369(+)
94122.Shewana3_3347(+)
94122.Shewana3_0245(+)
94122.Shewana3_3011(+)
94122.Shewana3_0060(+)
94122.Shewana3_0061(+)
94122.Shewana3_2670(+)
94122.Shewana3_0111(+)
94122.Shewana3_0840(+)
94122.Shewana3_1536(+)
94122.Shewana3_1159(+)
94122.Shewana3_2629(+)
94122.Shewana3_1710(+)
94122.Shewana3_3578(+)
94122.Shewana3_3804(+)
94122.Shewana3_3151(+)
94122.Shewana3_3627(+)
94122.Shewana3_0053(+)
94122.Shewana3_0057(+)
94122.Shewana3_3021(+)
94122.Shewana3_0438(+)
94122.Shewana3_4117(+)
94122.Shewana3_3499(+)
94122.Shewana3_3493(+)
94122.Shewana3_3704(+)
94122.Shewana3_3546(+)
94122.Shewana3_3702(+)
94122.Shewana3_3638(+)
94122.Shewana3_1892(+)
94122.Shewana3_0045(+)
94122.Shewana3_0042(+)
94122.Shewana3_0043(+)
94122.Shewana3_1953(+)
94122.Shewana3_0550(+)
94122.Shewana3_2768(+)
94122.Shewana3_0950(+)
94122.Shewana3_2979(+)
94122.Shewana3_1552(+)
94122.Shewana3_1602(+)
94122.Shewana3_1607(+)
94122.Shewana3_3602(+)
94122.Shewana3_0079(+)
94122.Shewana3_0414(+)
94122.Shewana3_0149(+)
94122.Shewana3_1388(+)
94122.Shewana3_2942(+)
94122.Shewana3_2574(+)
94122.Shewana3_0143(+)
94122.Shewana3_2707(+)
94122.Shewana3_2702(+)
94122.Shewana3_2839(+)
94122.Shewana3_3834(+)
94122.Shewana3_2230(+)
94122.Shewana3_2237(+)
94122.Shewana3_2238(+)
94122.Shewana3_3617(+)
94122.Shewana3_0082(+)
94122.Shewana3_0085(+)
94122.Shewana3_0393(+)
94122.Shewana3_3223(+)
94122.Shewana3_1289(+)
94122.Shewana3_1579(+)
94122.Shewana3_1592(+)
94122.Shewana3_2712(+)
94122.Shewana3_2134(+)
94122.Shewana3_2136(+)
94122.Shewana3_3537(+)
94122.Shewana3_2821(+)
94122.Shewana3_2826(+)
94122.Shewana3_2224(+)
94122.Shewana3_3280(+)
94122.Shewana3_3263(+)
94122.Shewana3_3066(+)
94122.Shewana3_1968(+)
94122.Shewana3_2563(+)
94122.Shewana3_4088(+)
94122.Shewana3_1297(+)
94122.Shewana3_0213(+)
94122.Shewana3_1566(+)
94122.Shewana3_1561(+)
94122.Shewana3_1035(+)
94122.Shewana3_2031(+)
94122.Shewana3_3986(+)
94122.Shewana3_3524(+)
94122.Shewana3_0770(+)
94122.Shewana3_1913(+)
94122.Shewana3_1911(+)
94122.Shewana3_1910(+)
94122.Shewana3_1825(+)
94122.Shewana3_0205(+)
94122.Shewana3_2939(+)
94122.Shewana3_1838(+)
94122.Shewana3_1005(+)
94122.Shewana3_2734(+)
94122.Shewana3_2732(+)
94122.Shewana3_3465(+)
94122.Shewana3_3462(+)
94122.Shewana3_3515(+)
94122.Shewana3_2843(+)
94122.Shewana3_2596(+)
94122.Shewana3_3246(+)
94122.Shewana3_1146(+)
94122.Shewana3_2112(+)
94122.Shewana3_0745(+)
94122.Shewana3_0525(+)
94122.Shewana3_1950(+)
94122.Shewana3_2901+
94122.Shewana3_2903(+)
94122.Shewana3_4126(+)
94122.Shewana3_2907(+)
94122.Shewana3_0832(+)
94122.Shewana3_2694(+)
94122.Shewana3_1654(+)
94122.Shewana3_1945(+)
94122.Shewana3_3650(+)
94122.Shewana3_3659(+)
94122.Shewana3_1308(+)
94122.Shewana3_0756(+)
94122.Shewana3_1932(+)
94122.Shewana3_1935(+)
94122.Shewana3_0517(+)
94122.Shewana3_3661(+)
94122.Shewana3_1249(+)
94122.Shewana3_1339(+)
94122.Shewana3_2919(+)
94122.Shewana3_1799(+)
94122.Shewana3_2608(+)
94122.Shewana3_1465(+)
94122.Shewana3_1469(+)
94122.Shewana3_1795(+)
94122.Shewana3_2041(+)
94122.Shewana3_3793(+)
94122.Shewana3_3790(+)
94122.Shewana3_2786(+)
94122.Shewana3_3134(+)
94122.Shewana3_1925(+)
94122.Shewana3_0322(+)
94122.Shewana3_0329(+)
94122.Shewana3_1811(+)
94122.Shewana3_1324(+)
94122.Shewana3_1326(+)
94122.Shewana3_0255(+)
94122.Shewana3_0251(+)
94122.Shewana3_0810(+)
94122.Shewana3_1496(+)
94122.Shewana3_2072(+)
94122.Shewana3_2090(+)
94122.Shewana3_2524(+)
94122.Shewana3_3306(+)
94122.Shewana3_3781(+)
94122.Shewana3_2553(+)
94122.Shewana3_0578(+)
94122.Shewana3_3122(+)
94122.Shewana3_0338(+)
94122.Shewana3_0800(+)
94122.Shewana3_0315(+)
94122.Shewana3_0581(+)
94122.Shewana3_2793(+)
94122.Shewana3_2752(+)
94122.Shewana3_1049(+)
94122.Shewana3_2242(+)
94122.Shewana3_3200(+)
94122.Shewana3_3209(+)
94122.Shewana3_0962(+)
94122.Shewana3_2612(+)
94122.Shewana3_0497(+)
94122.Shewana3_3422(+)
94122.Shewana3_1871(+)
94122.Shewana3_2571(+)
94122.Shewana3_4020(+)
94122.Shewana3_2572(+)
94122.Shewana3_1301(+)
94122.Shewana3_4009(+)
94122.Shewana3_1457(+)
94122.Shewana3_2505(+)
94122.Shewana3_2500(+)
94122.Shewana3_2508(+)
94122.Shewana3_3327(+)
94122.Shewana3_3106(+)
94122.Shewana3_3107(+)
94122.Shewana3_2379(+)
94122.Shewana3_0984(+)
94122.Shewana3_0987(+)
94122.Shewana3_0648(+)
94122.Shewana3_0649(+)
94122.Shewana3_0004(+)
94122.Shewana3_4011(+)
94122.Shewana3_0009(+)
94122.Shewana3_1523(+)
94122.Shewana3_1511(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================