Effective results for Cupriavidus taiwanensis LMG 19424 (eggnog40)

Summary

Number of putative secreted proteins: 782
- Predicted by EffectiveT3: 268 (high confidence), 369 (low confidence)
- Predicted by EffectiveCCBD: 22 within, 11 before, 45 behind expected region 25..70aa
- Predicted by T4SEpre: 72
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 39 proteins (0 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
977880.RALTA_A2503		+			(ER)
977880.RALTA_B1421				(PF06863) (PF06742)	(ER)
977880.RALTA_B0340				(PF06863) (PF06742)	ER
977880.RALTA_A0468		(>)		(PF00639)	ER
977880.RALTA_B0518				(PF06742) (PF06863)	ER
977880.RALTA_B0888				(PF13660) (PF05161)	(mitochondrial)
977880.RALTA_A2392			+		ER
977880.RALTA_A0542		(>)			(ER); ER
977880.RALTA_A0725			+		(mitochondrial)
977880.RALTA_B2121			+		mitochondrial
977880.RALTA_A1455				(PF00639)	ER
977880.RALTA_A3064		(>)			ER
977880.RALTA_A1875		+			ER
977880.RALTA_A2193		(>)			ER
977880.RALTA_A1060			+		ER
977880.RALTA_A0821			+		(mitochondrial)
977880.RALTA_A2990		(>)			(mitochondrial); ER
977880.RALTA_A2694		(>)			ER
977880.RALTA_B1244				(PF16013) (PF14336)	(mitochondrial)
977880.RALTA_A1078			+		(mitochondrial)
977880.RALTA_A2958		(>)			(mitochondrial)
977880.RALTA_B1503		+			(mitochondrial)
977880.RALTA_A2522	+				(ER)
977880.RALTA_A3138	+				mitochondrial
977880.RALTA_A1799	+				(ER)
977880.RALTA_B0627			+		ER
977880.RALTA_B0094	+				(mitochondrial)
977880.RALTA_A1420		(>)			ER
977880.RALTA_B0779	+				(mitochondrial)
977880.RALTA_A2653			+		(mitochondrial)
977880.RALTA_B0459		(>)			mitochondrial; (mitochondrial)
977880.RALTA_A0949	+				(mitochondrial); plastid
977880.RALTA_A1437				(PF00639)	ER
977880.RALTA_A1668			+		ER
977880.RALTA_B0163	+				mitochondrial
977880.RALTA_A0719	(+)		+		ER
977880.RALTA_A2497	+				(mitochondrial); (plastid)
977880.RALTA_A2845		(<)			ER
977880.RALTA_B1755		(<)			ER
977880.RALTA_B1196	+				(ER); plastid
977880.RALTA_B1372	+				ER
977880.RALTA_B0005			+		mitochondrial
977880.RALTA_A0522		(>)		(PF00162)	(plastid)
977880.RALTA_B1963			+		ER
977880.RALTA_A0748			+		mitochondrial
977880.RALTA_A0335		(<)			ER
977880.RALTA_B0381			+		ER
977880.RALTA_B2170			+		ER
977880.RALTA_A0189		(<)			ER
977880.RALTA_A3183		+			ER
977880.RALTA_B1817	+				(mitochondrial)
977880.RALTA_B2163	+				mitochondrial
977880.RALTA_A0976		(>)			ER
977880.RALTA_A2453	+				(mitochondrial); plastid
977880.RALTA_A1328		+			(ER)
977880.RALTA_B1745		(>)			(mitochondrial)
977880.RALTA_A1558				(PF07250)	ER
977880.RALTA_B0847				(PF14588)	ER
977880.RALTA_A1460		(>)			(ER)
977880.RALTA_A0364	+				mitochondrial
977880.RALTA_B0563		+			ER
977880.RALTA_A0717	+				(mitochondrial)
977880.RALTA_B2131		+			mitochondrial
977880.RALTA_B1444			+		ER
977880.RALTA_A1859	(+)				ER; (ER)
977880.RALTA_B0538			+		(mitochondrial)
977880.RALTA_B1695	+	(>)
977880.RALTA_B2128	+				plastid
977880.RALTA_A1454	(+)				(mitochondrial)
977880.RALTA_B0875	(+)				ER
977880.RALTA_A1866	+				(ER)
977880.RALTA_A0028	(+)				(mitochondrial)
977880.RALTA_A0025	(+)				(ER); plastid
977880.RALTA_B0793	+				(plastid)
977880.RALTA_B0225	+				plastid
977880.RALTA_A0838	(+)				mitochondrial; (mitochondrial)
977880.RALTA_B0132	+				(plastid)
977880.RALTA_A2402	+				(plastid)
977880.RALTA_A2577	+	(<)
977880.RALTA_A0580	+				(plastid)
977880.RALTA_A2971	+				(plastid)
977880.RALTA_B1073	(+)				mitochondrial; (mitochondrial)
977880.RALTA_A0827	(+)				(mitochondrial)
977880.RALTA_A2509	(+)				(mitochondrial); (plastid)
977880.RALTA_A2320		(>)			(ER)
977880.RALTA_A2034	(+)				(mitochondrial); (plastid)
977880.RALTA_A0049	(+)				(mitochondrial); (plastid)
977880.RALTA_B1403	(+)		+		(mitochondrial)
977880.RALTA_A0562		+			(plastid)
977880.RALTA_B1886				(PF06863) (PF06742)
977880.RALTA_A1070			+		(mitochondrial)
977880.RALTA_B0752	+				(plastid)
977880.RALTA_B0750				(PF06742) (PF06863)
977880.RALTA_B0755	+			(PF00614)
977880.RALTA_A1520	+				plastid
977880.RALTA_B0115	+				plastid
977880.RALTA_A1093			+		(plastid)
977880.RALTA_A1895	(+)				ER
977880.RALTA_B2300	+				(mitochondrial)
977880.RALTA_A0072	+	(>)
977880.RALTA_B0082	(+)				ER
977880.RALTA_B0749				(PF06742) (PF06863)
977880.RALTA_A1244	(+)				mitochondrial; plastid
977880.RALTA_B0087	(+)				ER; (ER)
977880.RALTA_B2197	+				plastid
977880.RALTA_A1427	+	+
977880.RALTA_A1285	+				(ER)
977880.RALTA_A1254	(+)				(mitochondrial); plastid
977880.RALTA_A3128	+				plastid
977880.RALTA_A0611	(+)				(mitochondrial)
977880.RALTA_A0656	+				(ER)
977880.RALTA_A2821	+				plastid
977880.RALTA_B1560		(>)	+
977880.RALTA_B1366	(+)				(ER)
977880.RALTA_B1982	+				(mitochondrial)
977880.RALTA_A0793		+			(ER)
977880.RALTA_A2115	(+)				(ER)
977880.RALTA_B1389	+				(plastid)
977880.RALTA_B0143	(+)			(PF03169)	(plastid)
977880.RALTA_A1973	+				plastid
977880.RALTA_B0203		+			(mitochondrial)
977880.RALTA_B2090	(+)				(ER)
977880.RALTA_A0187	(+)				(mitochondrial)
977880.RALTA_B1463	+				(plastid)
977880.RALTA_A3055	(+)			(PF13660) (PF05161)
977880.RALTA_A0434				(PF13660) (PF05161)
977880.RALTA_A3185	+				(plastid)
977880.RALTA_A3180	(+)				(mitochondrial)
977880.RALTA_A2044	+				(ER)
977880.RALTA_A1747	(+)				mitochondrial; (mitochondrial)
977880.RALTA_A2734			+		(mitochondrial)
977880.RALTA_A0510	+				(plastid)
977880.RALTA_A2858		+			(ER)
977880.RALTA_B1484	+				plastid
977880.RALTA_B0668	(+)				(ER)
977880.RALTA_B0282	(+)				(mitochondrial)
977880.RALTA_A0385	+				(plastid)
977880.RALTA_A2702		(>)			(mitochondrial)
977880.RALTA_A3093		(<)	+
977880.RALTA_B0869	(+)				ER
977880.RALTA_B1038	+				(plastid)
977880.RALTA_B1723	+				(plastid)
977880.RALTA_A2938	(+)				mitochondrial; (mitochondrial)
977880.RALTA_A1690			+		(plastid)
977880.RALTA_A2435	+				(ER)
977880.RALTA_A0290		(>)	+
977880.RALTA_B1849	(+)				mitochondrial
977880.RALTA_B1590	(+)				(mitochondrial)
977880.RALTA_B0646	+				plastid
977880.RALTA_A2423			+
977880.RALTA_A2429	+
977880.RALTA_B1670	(+)	(>)
977880.RALTA_A1854			+
977880.RALTA_A1857	(+)				(mitochondrial)
977880.RALTA_A0540	+
977880.RALTA_A1707	+
977880.RALTA_A2174				(PF00639)
977880.RALTA_A2173	+
977880.RALTA_A0720	+
977880.RALTA_A1759	(+)		+
977880.RALTA_B1691	(+)			(PF00162)
977880.RALTA_B2010		(>)
977880.RALTA_A0034	+
977880.RALTA_A0153	+
977880.RALTA_B0477				(PF06742)
977880.RALTA_A1284			+
977880.RALTA_A1287	(+)	(>)
977880.RALTA_A2410	+
977880.RALTA_A1379		+
977880.RALTA_B1813	+
977880.RALTA_A2562	+
977880.RALTA_A2662	(+)				(mitochondrial)
977880.RALTA_B0286	+
977880.RALTA_B1676	+
977880.RALTA_A0486	+
977880.RALTA_A0735	+
977880.RALTA_A1605	+
977880.RALTA_B0698	+
977880.RALTA_B1686	+
977880.RALTA_B1683	+
977880.RALTA_B2068	+
977880.RALTA_A0967	+
977880.RALTA_A0029	(+)				(mitochondrial)
977880.RALTA_A0024	+
977880.RALTA_A0126	+
977880.RALTA_A2026	+
977880.RALTA_B1869	+
977880.RALTA_B0310			+
977880.RALTA_B0404	+
977880.RALTA_A2745	+
977880.RALTA_A1059	+
977880.RALTA_A1292	+
977880.RALTA_B0131			+
977880.RALTA_A0901		(>)
977880.RALTA_A1186			+
977880.RALTA_A1985			+
977880.RALTA_A0609	+
977880.RALTA_A1724	+
977880.RALTA_A1720				(PF10994)
977880.RALTA_A2191	+
977880.RALTA_A1612	+
977880.RALTA_A0582		+
977880.RALTA_A1503	+
977880.RALTA_B1679	+
977880.RALTA_A0018	+
977880.RALTA_B1072	+
977880.RALTA_B1077	+
977880.RALTA_B1895	+
977880.RALTA_B0787			+
977880.RALTA_B0120	+
977880.RALTA_B0128	+
977880.RALTA_A0225	+
977880.RALTA_A3112	+
977880.RALTA_B0234	(+)				plastid
977880.RALTA_A3021			+
977880.RALTA_A0345	+
977880.RALTA_A1888	+
977880.RALTA_A2030	+
977880.RALTA_A0593	(+)	(>)
977880.RALTA_A0108	+
977880.RALTA_B1402	+
977880.RALTA_B2043		(<)
977880.RALTA_B2046				(PF00639)
977880.RALTA_B1622	+
977880.RALTA_A1408				(PF14588)
977880.RALTA_B0334	(+)				(mitochondrial)
977880.RALTA_B0246	(+)				(plastid)
977880.RALTA_B0209		(<)
977880.RALTA_B0758	+
977880.RALTA_B0759	+
977880.RALTA_A1274			+
977880.RALTA_A2922				(PF01176)
977880.RALTA_B0116	+
977880.RALTA_B0112	+
977880.RALTA_A2513			+
977880.RALTA_A1099	+
977880.RALTA_A3039	+
977880.RALTA_A1894	(+)		+
977880.RALTA_A2208	+
977880.RALTA_A0455	(+)				(plastid)
977880.RALTA_A2330	+
977880.RALTA_A1675	+
977880.RALTA_A1676		(>)
977880.RALTA_B2309	+
977880.RALTA_B1650	+
977880.RALTA_B1652	+
977880.RALTA_B2270	+
977880.RALTA_A1237		(>)
977880.RALTA_A2163			+
977880.RALTA_A1417	+
977880.RALTA_A2687	+
977880.RALTA_A2686	+
977880.RALTA_A2689	+
977880.RALTA_B1433				(PF07958)
977880.RALTA_B1434	(+)			(PF12471)
977880.RALTA_B0921	+
977880.RALTA_B0927	(+)				(plastid)
977880.RALTA_A2829		(<)
977880.RALTA_B1371		(>)
977880.RALTA_B0690	+
977880.RALTA_A1243	+
977880.RALTA_B0108	(+)				(plastid)
977880.RALTA_B0107	(+)				(plastid)
977880.RALTA_B2192	+
977880.RALTA_B2138	+
977880.RALTA_A3135	(+)				(mitochondrial)
977880.RALTA_A2059		(>)
977880.RALTA_A3008	+
977880.RALTA_A2234	+
977880.RALTA_A2237	+
977880.RALTA_A2303	+
977880.RALTA_A2306	+
977880.RALTA_A2010	+
977880.RALTA_A0063	+
977880.RALTA_B2206	+
977880.RALTA_B2198		+
977880.RALTA_A1425		(>)
977880.RALTA_B1649	+
977880.RALTA_A2833	(+)				(plastid)
977880.RALTA_B1516	+
977880.RALTA_B1427	+
977880.RALTA_A1331	+
977880.RALTA_B0612	+
977880.RALTA_B1033	(+)		+
977880.RALTA_B0771	+
977880.RALTA_B0351	+
977880.RALTA_A0309			+
977880.RALTA_B0177	+
977880.RALTA_B0309	(+)				(plastid)
977880.RALTA_A0471	+
977880.RALTA_A1658	+
977880.RALTA_B1534	+
977880.RALTA_B2211		(>)
977880.RALTA_B1585	(+)				(plastid)
977880.RALTA_B1743			+
977880.RALTA_B1632			+
977880.RALTA_B1630	+
977880.RALTA_A0266		+
977880.RALTA_B1182	+
977880.RALTA_B0766	+
977880.RALTA_B0345	+
977880.RALTA_B0343			+
977880.RALTA_A0863	+
977880.RALTA_A0143	(+)		+
977880.RALTA_A1139	(+)	(>)
977880.RALTA_A1131	(+)				(mitochondrial)
977880.RALTA_B0019	+
977880.RALTA_B0366	+
977880.RALTA_A1914	+
977880.RALTA_A3060	(+)		+
977880.RALTA_A2490	(+)				(plastid)
977880.RALTA_A2493	+
977880.RALTA_A2494	+
977880.RALTA_B0295	(+)	+
977880.RALTA_A0815	+
977880.RALTA_A0467	+
977880.RALTA_A2070		(>)
977880.RALTA_A3203	+
977880.RALTA_A0763	+
977880.RALTA_B1626	+
977880.RALTA_B1623				(PF01176)
977880.RALTA_A0252	+				not used
977880.RALTA_B0578	+
977880.RALTA_B1575	+
977880.RALTA_B0571	(+)		+
977880.RALTA_B1375			+
977880.RALTA_B0808	+
977880.RALTA_B0803	+
977880.RALTA_B0805	+
977880.RALTA_B0391	+
977880.RALTA_B0396	(+)				(plastid)
977880.RALTA_B0394	+
977880.RALTA_B0025	+
977880.RALTA_B0023	+
977880.RALTA_A0305	+
977880.RALTA_A1023		(>)
977880.RALTA_B0004		(<)
977880.RALTA_A2712	+
977880.RALTA_A2535			+
977880.RALTA_A0416	+
977880.RALTA_A0415	+
977880.RALTA_A1402	+
977880.RALTA_B1088			+
977880.RALTA_A3210			+
977880.RALTA_B2237	+
977880.RALTA_A1168			+
977880.RALTA_A0638	+
977880.RALTA_B1612	+
977880.RALTA_B1615				(PF16155)
977880.RALTA_A0246	+
977880.RALTA_B1830	+
977880.RALTA_B0565	+
977880.RALTA_B0544	+
977880.RALTA_B0932	+
977880.RALTA_B1382				(PF14588)
977880.RALTA_A0215		(>)
977880.RALTA_A1117	+
977880.RALTA_B0038	+
977880.RALTA_A3015	+
977880.RALTA_A1177	+
977880.RALTA_A1841	+
977880.RALTA_A2270	+
977880.RALTA_B1335	+
977880.RALTA_A3042	+
977880.RALTA_A0635	(+)				(plastid)
977880.RALTA_B1561	+
977880.RALTA_A1801	+
977880.RALTA_A2584	+
977880.RALTA_A3198	+
977880.RALTA_A3197	+
977880.RALTA_A1754	+
977880.RALTA_A0624	+
977880.RALTA_B0557		(>)
977880.RALTA_B1779	+
977880.RALTA_B1778	+
977880.RALTA_B1393	(+)				(plastid)
977880.RALTA_B0824	+
977880.RALTA_A1106	+
977880.RALTA_A1105	+
977880.RALTA_B0600	+
977880.RALTA_B0730	+
977880.RALTA_A0299	+
977880.RALTA_A2615	+
977880.RALTA_A0986	+
977880.RALTA_A1358	+
977880.RALTA_A2806	+
977880.RALTA_A1964				(PF01176)
977880.RALTA_A1466	+
977880.RALTA_A2045			+
977880.RALTA_A2041		(>)
977880.RALTA_B1009	+
977880.RALTA_A1588	+				not used
977880.RALTA_B2166	+
977880.RALTA_B1763			+
977880.RALTA_B0610	+
977880.RALTA_B0615	(+)				(mitochondrial)
977880.RALTA_B0720	+
977880.RALTA_A0991	+
977880.RALTA_B0051			+
977880.RALTA_B0050	+
977880.RALTA_A0977	+
977880.RALTA_A2455	+
977880.RALTA_A2457	+
977880.RALTA_A0427	+
977880.RALTA_A0654	+
977880.RALTA_A1958	+
977880.RALTA_A1789	+
977880.RALTA_A1951	+
977880.RALTA_A1058	+
977880.RALTA_A0512	(+)				(plastid)
977880.RALTA_A0517	+
977880.RALTA_A0515	+
977880.RALTA_A1770	+
977880.RALTA_A2145	+
977880.RALTA_B2288	+
977880.RALTA_B2287	(+)			(PF03169)
977880.RALTA_B2114	+
977880.RALTA_B2113	+
977880.RALTA_B1953			+
977880.RALTA_B1952		(>)
977880.RALTA_A0773	+
977880.RALTA_B1050	(+)	(>)
977880.RALTA_A1391			+
977880.RALTA_A2856		+
977880.RALTA_B1480	+
977880.RALTA_B1983	+
977880.RALTA_B0999	(+)				(plastid)
977880.RALTA_B0444				(PF10994)
977880.RALTA_B1985	+
977880.RALTA_A0168	+
977880.RALTA_A1112			+
977880.RALTA_A2636	+
977880.RALTA_B1831	+
977880.RALTA_B0264	+
977880.RALTA_A0944	(+)				(plastid)
977880.RALTA_B0065		(>)
977880.RALTA_A2612		(>)
977880.RALTA_A1834		+
977880.RALTA_A1941			+
977880.RALTA_B1248	+
977880.RALTA_B1436	+
977880.RALTA_B1993	+
977880.RALTA_A2151	+
977880.RALTA_A2152				(PF14588)
977880.RALTA_B2105	(+)			(PF08857)
977880.RALTA_B2101				(PF08857)
977880.RALTA_B2103	+
977880.RALTA_B1035				(PF00614)
977880.RALTA_A2843		+
977880.RALTA_A0014	+
977880.RALTA_A1544	(+)				(plastid)
977880.RALTA_B1163	+				not used
977880.RALTA_B1857				(PF09825)
977880.RALTA_B0293	+
977880.RALTA_B0279	+
977880.RALTA_B0278	+
977880.RALTA_A0952	+
977880.RALTA_A0950	+
977880.RALTA_A0075	+
977880.RALTA_B0624	+
977880.RALTA_A2716				(PF03169)
977880.RALTA_A1480	+
977880.RALTA_A2132	+
977880.RALTA_A2894			+
977880.RALTA_A1966	+
977880.RALTA_B0528	+				not used
977880.RALTA_A2544	+
977880.RALTA_A0311	+
977880.RALTA_A0573	(+)	(>)
977880.RALTA_A0866	+
977880.RALTA_A0405		+
977880.RALTA_A2092		(>)
977880.RALTA_A2365	(+)				(mitochondrial)
977880.RALTA_B1325		(>)
977880.RALTA_A1620		(>)
977880.RALTA_B1109	+
977880.RALTA_B1138		+
977880.RALTA_A0714	+
977880.RALTA_B2130	(+)				(plastid)
977880.RALTA_A0292	+
977880.RALTA_B1440	+
977880.RALTA_A2949	+
977880.RALTA_B0880	+
977880.RALTA_B1000		(>)
977880.RALTA_B2028	+
977880.RALTA_A1459	+
977880.RALTA_A2890	+
977880.RALTA_A0927	+
977880.RALTA_A2766	(+)				(plastid)
977880.RALTA_A2763	+
977880.RALTA_B1483	(+)
977880.RALTA_A2391	(+)
977880.RALTA_A2550	(+)
977880.RALTA_A2086	(+)
977880.RALTA_B1277	(+)
977880.RALTA_A1702	(+)
977880.RALTA_A1709	(+)
977880.RALTA_A2377	(+)
977880.RALTA_B1394	(+)
977880.RALTA_A2172	(+)
977880.RALTA_A0495	(+)
977880.RALTA_A0728	(+)
977880.RALTA_B1907	(+)
977880.RALTA_B2017	(+)
977880.RALTA_B2129	(+)
977880.RALTA_A0032	(+)
977880.RALTA_B1478	(+)
977880.RALTA_B1870	(+)
977880.RALTA_A2774	(+)
977880.RALTA_A1195	(+)
977880.RALTA_A1190	(+)
977880.RALTA_B0744	(+)
977880.RALTA_B0195	(+)
977880.RALTA_A1996	(+)
977880.RALTA_A0557	(+)
977880.RALTA_A0556	(+)
977880.RALTA_A0551	(+)
977880.RALTA_ACDS2467000R	(+)
977880.RALTA_A1733	(+)
977880.RALTA_A2344	(+)
977880.RALTA_A2189	(+)
977880.RALTA_A0734	(+)
977880.RALTA_B2243	(+)
977880.RALTA_ACDS2808859R	(+)
977880.RALTA_B1914	(+)
977880.RALTA_A1512	(+)
977880.RALTA_A2997	(+)
977880.RALTA_B1685	(+)
977880.RALTA_A0023	(+)
977880.RALTA_A0122	(+)
977880.RALTA_B1462	(+)
977880.RALTA_A2964	(+)
977880.RALTA_B1592	(+)
977880.RALTA_B0318	(+)
977880.RALTA_A0232	(+)
977880.RALTA_A0839	(+)
977880.RALTA_A0832	(+)
977880.RALTA_A2407	(+)
977880.RALTA_A2405	(+)
977880.RALTA_A0905	(+)
977880.RALTA_A2575	(+)
977880.RALTA_A3167	(+)
977880.RALTA_A1877	(+)
977880.RALTA_A1871	(+)
977880.RALTA_A2198	(+)
977880.RALTA_A2099	(+)
977880.RALTA_A1611	(+)
977880.RALTA_A1614	(+)
977880.RALTA_A1618	(+)
977880.RALTA_B1144	(+)
977880.RALTA_A0585	(+)
977880.RALTA_B0849	(+)
977880.RALTA_B2079	(+)
977880.RALTA_A0137	(+)
977880.RALTA_A0131	(+)
977880.RALTA_B1787	(+)
977880.RALTA_B1781	(+)
977880.RALTA_A2975	(+)
977880.RALTA_A0226	(+)
977880.RALTA_A2750	(+)
977880.RALTA_A0826	(+)				not used
977880.RALTA_A0824	(+)
977880.RALTA_A1266	(+)
977880.RALTA_A1267	(+)
977880.RALTA_B0124	(+)
977880.RALTA_B0129	(+)
977880.RALTA_A1089	(+)
977880.RALTA_A1062	(+)
977880.RALTA_A2033	(+)
977880.RALTA_A0048	(+)
977880.RALTA_A0045	(+)
977880.RALTA_B1409	(+)
977880.RALTA_B2040	(+)
977880.RALTA_B1085	(+)
977880.RALTA_B0935	(+)
977880.RALTA_A0218	(+)
977880.RALTA_A0210	(+)
977880.RALTA_A1275	(+)
977880.RALTA_B0242	(+)
977880.RALTA_A2512	(+)
977880.RALTA_A3030	(+)
977880.RALTA_A3033	(+)
977880.RALTA_B1574	(+)				not used
977880.RALTA_A0918	(+)
977880.RALTA_A2540	(+)
977880.RALTA_A1767	(+)
977880.RALTA_A2024	(+)
977880.RALTA_A0813	(+)
977880.RALTA_B1171	(+)
977880.RALTA_A0202	(+)
977880.RALTA_A2685	(+)
977880.RALTA_A1305	(+)
977880.RALTA_B1349	(+)
977880.RALTA_B1347	(+)
977880.RALTA_B1344	(+)
977880.RALTA_B1342	(+)
977880.RALTA_B0322	(+)
977880.RALTA_B0694	(+)
977880.RALTA_A3007	+
977880.RALTA_A3001	(+)
977880.RALTA_A0449	(+)
977880.RALTA_A0660	(+)
977880.RALTA_B1501	(+)
977880.RALTA_A0668	(+)
977880.RALTA_A2011	(+)
977880.RALTA_A0065	(+)
977880.RALTA_A0061	(+)
977880.RALTA_A2909	(+)
977880.RALTA_B0092	(+)
977880.RALTA_B2201	(+)
977880.RALTA_B0030	(+)
977880.RALTA_B2194	(+)
977880.RALTA_A0279	(+)
977880.RALTA_B0595	(+)
977880.RALTA_B1424	(+)
977880.RALTA_B0914	(+)
977880.RALTA_B1428	(+)
977880.RALTA_A1332	(+)
977880.RALTA_B0770	(+)
977880.RALTA_B0350	(+)
977880.RALTA_A0870	(+)
977880.RALTA_B0179	(+)
977880.RALTA_B0170	(+)
977880.RALTA_A0891	(+)
977880.RALTA_A1147	(+)
977880.RALTA_A2650	(+)
977880.RALTA_A0378	(+)
977880.RALTA_A0092	(+)
977880.RALTA_B2219	(+)
977880.RALTA_A0650	(+)
977880.RALTA_A0652	(+)
977880.RALTA_A0268	(+)
977880.RALTA_A2826	(+)
977880.RALTA_B0584	(+)
977880.RALTA_B0580	(+)
977880.RALTA_B1564	(+)
977880.RALTA_A1323	(+)
977880.RALTA_A0868	(+)
977880.RALTA_A2640	(+)
977880.RALTA_B0015	(+)
977880.RALTA_A2993	(+)
977880.RALTA_A0142	(+)
977880.RALTA_A1918	(+)
977880.RALTA_A2492	(+)
977880.RALTA_B1949	(+)
977880.RALTA_A0083	(+)
977880.RALTA_B1527	(+)
977880.RALTA_A0645	(+)
977880.RALTA_B2154	(+)
977880.RALTA_B1193	(+)
977880.RALTA_A1350	(+)
977880.RALTA_B0484	(+)
977880.RALTA_B1377	(+)
977880.RALTA_A0324	(+)
977880.RALTA_A2670	(+)
977880.RALTA_A1122	(+)
977880.RALTA_B2258	(+)
977880.RALTA_A1567	(+)
977880.RALTA_A0523	(+)
977880.RALTA_A0525	(+)
977880.RALTA_B2233	(+)
977880.RALTA_B2143	(+)
977880.RALTA_B1769	(+)
977880.RALTA_B2147	(+)
977880.RALTA_B1962	(+)
977880.RALTA_A0245	(+)
977880.RALTA_B0569	(+)
977880.RALTA_B0568	(+)
977880.RALTA_A0628	(+)
977880.RALTA_B0966	(+)
977880.RALTA_A1347	(+)
977880.RALTA_B0633	(+)
977880.RALTA_A1173	(+)
977880.RALTA_B1333	(+)
977880.RALTA_A3047	(+)
977880.RALTA_A2476	(+)
977880.RALTA_A0288	(+)
977880.RALTA_A2297	(+)
977880.RALTA_A2126	(+)
977880.RALTA_A0620	(+)
977880.RALTA_B1606	(+)
977880.RALTA_B1159	(+)
977880.RALTA_B1157	(+)
977880.RALTA_B0602	+
977880.RALTA_A0297	(+)
977880.RALTA_A0961	(+)				not used
977880.RALTA_A0966	(+)
977880.RALTA_A1578	(+)
977880.RALTA_A3051	(+)
977880.RALTA_A3050	(+)
977880.RALTA_A2469	(+)
977880.RALTA_A0431	(+)
977880.RALTA_A2595	(+)
977880.RALTA_A3044	(+)
977880.RALTA_A0509	(+)
977880.RALTA_A0503	(+)
977880.RALTA_A0612	(+)
977880.RALTA_A1741	(+)
977880.RALTA_A1587	(+)
977880.RALTA_B0152	(+)
977880.RALTA_A1208	+
977880.RALTA_B2162	(+)
977880.RALTA_A0768	(+)
977880.RALTA_A1361	(+)
977880.RALTA_A2862	(+)
977880.RALTA_B1709	(+)
977880.RALTA_B1492	(+)
977880.RALTA_B0947	(+)
977880.RALTA_B2205	(+)
977880.RALTA_B2029	(+)
977880.RALTA_B1613	(+)
977880.RALTA_A1176	(+)
977880.RALTA_A0283	(+)
977880.RALTA_B0729	(+)
977880.RALTA_A2608	(+)
977880.RALTA_B1549	(+)
977880.RALTA_A2737	(+)
977880.RALTA_A1824	(+)
977880.RALTA_A2600	(+)
977880.RALTA_A1950	(+)
977880.RALTA_A2749	(+)
977880.RALTA_B2182	(+)
977880.RALTA_A1955	(+)
977880.RALTA_A0996	(+)
977880.RALTA_A1778	(+)
977880.RALTA_A0600	(+)
977880.RALTA_A0608	(+)
977880.RALTA_B2020	(+)
977880.RALTA_B1713	(+)
977880.RALTA_B1835	(+)
977880.RALTA_B1481	(+)
977880.RALTA_B1242	(+)
977880.RALTA_A2929	(+)
977880.RALTA_A0367	(+)
977880.RALTA_B0669	(+)
977880.RALTA_B0066	(+)
977880.RALTA_A0948	(+)
977880.RALTA_A2441	(+)
977880.RALTA_B1378	(+)
977880.RALTA_A2825	(+)
977880.RALTA_A1839	(+)
977880.RALTA_B1569	(+)
977880.RALTA_A0565	(+)
977880.RALTA_A0603	(+)
977880.RALTA_B1022	(+)
977880.RALTA_B1141	(+)
977880.RALTA_A1497	(+)
977880.RALTA_B2032	(+)
977880.RALTA_A1320	(+)
977880.RALTA_A1541	(+)
977880.RALTA_A0376	(+)
977880.RALTA_A0371	(+)
977880.RALTA_B0525	(+)
977880.RALTA_A2622	(+)
977880.RALTA_B1212	(+)
977880.RALTA_B0296	(+)
977880.RALTA_B0079	(+)
977880.RALTA_B0181	(+)
977880.RALTA_A0395	(+)
977880.RALTA_A2436	(+)
977880.RALTA_A1842	(+)
977880.RALTA_A2545	(+)
977880.RALTA_A2666	(+)
977880.RALTA_B0063	(+)
977880.RALTA_A2165	(+)
977880.RALTA_A2167	(+)
977880.RALTA_A3025	(+)
977880.RALTA_B0868	(+)
977880.RALTA_B1930	(+)
977880.RALTA_B2000	(+)
977880.RALTA_B0945	(+)
977880.RALTA_B2009	(+)
977880.RALTA_B1731	(+)
977880.RALTA_A0003	(+)
977880.RALTA_B0466	(+)
977880.RALTA_B1028	(+)
977880.RALTA_A1440	(+)
977880.RALTA_B0867	(+)
977880.RALTA_A2643	+
977880.RALTA_B1007	(+)
977880.RALTA_A1057	(+)
977880.RALTA_B0248	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.1 (11/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================