Effective results for Staphylococcus argenteus (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 22 proteins (13 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
985002.SAMSHR1132_24680PF05257ER
985002.SAMSHR1132_06110PF05257(mitochondrial)
985002.SAMSHR1132_24770(PF00344)(mitochondrial)
985002.SAMSHR1132_24160(PF03306)(ER)
985002.SAMSHR1132_02490PF05257ER
985002.SAMSHR1132_07000PF05257ER
985002.SAMSHR1132_23640PF05257ER
985002.SAMSHR1132_22020(PF11070)ER
985002.SAMSHR1132_08780(PF09683)ER
985002.SAMSHR1132_20560(PF00344)(mitochondrial)
985002.SAMSHR1132_04090PF05257(ER)
985002.SAMSHR1132_21280PF05257(mitochondrial)
985002.SAMSHR1132_17880PF05257(mitochondrial)
985002.SAMSHR1132_23820PF05257(ER)
985002.SAMSHR1132_10900PF05257
985002.SAMSHR1132_06820(PF05495)
985002.SAMSHR1132_15370PF05257
985002.SAMSHR1132_21810(PF10571)
985002.SAMSHR1132_21240PF05257
985002.SAMSHR1132_22610PF08771
985002.SAMSHR1132_19530(PF03630)
985002.SAMSHR1132_20370(PF03306)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================