Effective results for Halomonas sp. TD01 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 36 proteins (4 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
999141.GME_08884(PF02275)ER
999141.GME_16777(PF02275)ER
999141.GME_09269(PF00209)ER
999141.GME_08049PF04910(mitochondrial); mitochondrial
999141.GME_10066(PF00209)(mitochondrial)
999141.GME_06799(PF00209)ER; (ER)
999141.GME_00350(PF02028)(ER)
999141.GME_14038(PF02028)ER
999141.GME_03097(PF02028)ER
999141.GME_12302(PF13332)(mitochondrial)
999141.GME_18188(PF02028)ER
999141.GME_13435(PF00209)(ER)
999141.GME_05145(PF01679)ER; not used
999141.GME_11747(PF09994)
999141.GME_17607(PF12038)
999141.GME_00870(PF02028)
999141.GME_01684(PF09994)
999141.GME_12337(PF13332)not used
999141.GME_18932(PF00209)
999141.GME_15195(PF10908)not used
999141.GME_07231(PF13875)
999141.GME_05325(PF02028)not used
999141.GME_05320(PF02028)
999141.GME_17582(PF09994)
999141.GME_09571(PF02028)
999141.GME_14033(PF02028)not used
999141.GME_12312(PF13332)
999141.GME_09551(PF02028)
999141.GME_05670(PF10908)
999141.GME_10016(PF02275)
999141.GME_02144(PF10013)not used
999141.GME_18765(PF01679)
999141.GME_11567PF06597
999141.GME_14193(PF00209)
999141.GME_11577PF06597
999141.GME_11572PF06597

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================