Effective results for Paenibacillus zanthoxyli JH29 (refseq)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 73 proteins (14 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_025691311.1(PF13802) (PF16338) (PF17137)ER
WP_025693230.1(PF13802) (PF16338) (PF17137)ER; (ER)
WP_025691049.1(PF13802) (PF16338) (PF17137)ER
WP_025688765.1PF08244 (PF00251)(mitochondrial)
WP_025693217.1PF08244 (PF00251)ER
WP_051459264.1PF08244 (PF00251)(ER); ER
WP_025690453.1PF08244 (PF00251)ER
WP_025689840.1(PF13394)ER; (ER)
WP_025691226.1PF10250(ER); (mitochondrial)
WP_025693277.1(PF09683)ER
WP_025689669.1(PF13787)ER
WP_025689718.1(PF13787)ER
WP_025691050.1(PF16657)ER
WP_025692977.1(PF13802) (PF16338) (PF17137)
WP_025692956.1(PF00148)(mitochondrial)
WP_025692255.1(PF13394)(mitochondrial)
WP_051459346.1PF08244 (PF00251)
WP_025690763.1(PF00707)(plastid)
WP_025689213.1PF08244 (PF00251)
WP_025690454.1PF08244 (PF00251)
WP_025691716.1PF08244 (PF00251)
WP_051459291.1PF08244 (PF00251)
WP_025689944.1(PF06500)(mitochondrial)
WP_051459307.1PF08244 (PF00251)
WP_025691225.1PF10250(ER)
WP_025691239.1PF08244 (PF00251)
WP_025690933.1PF08244 (PF00251)
WP_025693118.1(PF00148)(mitochondrial)
WP_025692213.1(PF00707)
WP_025692955.1(PF00148)
WP_025690430.1(PF13394)
WP_025689943.1(PF06500)
WP_025688017.1(PF02224)
WP_025691410.1(PF16804)
WP_025688636.1(PF06500)
WP_051459456.1(PF16657)
WP_025688147.1(PF13565)
WP_025693119.1(PF00148)
WP_025690854.1(PF13565)
WP_025689056.1(PF13394)
WP_025692946.1(PF00148)
WP_025692944.1(PF00148)
WP_025692942.1(PF00148)
WP_025688444.1(PF03318)
WP_025688384.1(PF16657)
WP_025690719.1(PF16657)
WP_025692953.1(PF00148)
WP_025692017.1(PF00148)
WP_025689234.1(PF16657)
WP_025691111.1(PF00148)
WP_025692571.1(PF13394)
WP_025691948.1(PF13565)
WP_025691060.1(PF00148)
WP_025690364.1(PF00148)
WP_025690366.1(PF00148)
WP_025691293.1(PF02224)
WP_025690368.1(PF00148)
WP_025688951.1(PF13394)
WP_025689610.1(PF16657)
WP_025690825.1(PF00148)
WP_025692945.1(PF00148)
WP_025691059.1(PF00148)
WP_025689398.1(PF13565)
WP_025693312.1(PF13565)
WP_025690826.1(PF00148)
WP_025690905.1(PF13394)
WP_036734862.1(PF13565)
WP_025691571.1(PF00165)
WP_025689767.1(PF13394)
WP_025692018.1(PF00148)
WP_025691580.1(PF13565)
WP_025690367.1(PF00148)
WP_025690732.1(PF16657)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================