Genomes encoding eukaryotic-like proteins

PF12812 PDZ-like domain

Copy number in non-pathogens:
Mean=0.01 Stddev=0.08

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Prevotella falsenii DSM 22864 = JCM 15124 s 12 1
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 12 1
Prevotella marshii DSM 16973 = JCM 13450 s 12 1
Bacteroides reticulotermitis JCM 10512 s 12 1
Prevotella pleuritidis JCM 14110 s 12 1
Prevotella shahii DSM 15611 = JCM 12083 s 12 1
Prevotella albensis DSM 11370 = JCM 12258 s 12 1
Bacteroides pyogenes DSM 20611 = JCM 6294 s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis ATCC 33277 s 12 1
Porphyromonas gingivalis TDC60 s 12 1
Bacteroides xylanisolvens SD CC 1b s 12 1
Bacteroides xylanisolvens SD CC 2a s 12 1
Bacteroides thetaiotaomicron s 12 1
Parabacteroides distasonis s 12 1
Bacteroides thetaiotaomicron s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Porphyromonas gingivalis s 12 1
Parabacteroides distasonis s 12 1
Parabacteroides distasonis s 12 1
Bacteroides thetaiotaomicron s 12 1
Bacteroides vulgatus s 12 1
Bacteroides vulgatus s 12 1
Bacteroides thetaiotaomicron s 12 1
Parabacteroides distasonis s 12 1
Bacteroides ovatus s 12 1
Bacteroides vulgatus s 12 1
Bacteroides thetaiotaomicron s 12 1
Parabacteroides distasonis s 12 1
Bacteroides dorei DSM 17855 s 12 1
Porphyromonas uenonis 60-3 s 12 1
Porphyromonas endodontalis ATCC 35406 s 12 1
Bacteroides xylanisolvens SD CC 1b s 12 1
Bacteroides vulgatus PC510 s 12 1
Bacteroides xylanisolvens SD CC 2a s 12 1
Prevotella bivia JCVIHMP010 s 12 1
Bacteroides ovatus SD CMC 3f s 12 1
Bacteroides finegoldii DSM 17565 s 12 1
Prevotella copri DSM 18205 s 12 1
Bacteroides sp. 3_1_13 s 12 1
Parabacteroides sp. D26 s 12 1
Prevotella marshii DSM 16973 = JCM 13450 s 12 1
Paraprevotella clara YIT 11840 s 12 1
Paraprevotella xylaniphila YIT 11841 s 12 1
Prevotella buccae ATCC 33574 s 12 1
Prevotella sp. oral taxon 472 str. F0295 s 12 1
Prevotella nigrescens ATCC 33563 s 12 1
Prevotella pallens ATCC 700821 s 12 1
Bacteroides caccae ATCC 43185 s 12 1
Bacteroides ovatus ATCC 8483 s 12 1
Bacteroides salanitronis DSM 18170 s 12 1
Porphyromonas gingivalis W50 s 12 1
Prevotella sp. MSX73 s 12 1
Prevotella nigrescens CC14M s 12 1
Prevotella bivia DSM 20514 s 12 1
Prevotella pleuritidis F0068 s 12 1
Porphyromonas gingivalis F0568 s 12 1
Porphyromonas gingivalis F0569 s 12 1
Porphyromonas gingivalis F0570 s 12 1
Porphyromonas gingivalis W4087 s 12 1
Porphyromonas gingivalis F0185 s 12 1
Porphyromonas gingivalis F0566 s 12 1
Bacteroides pyogenes F0041 s 12 1
Prevotella albensis DSM 11370 = JCM 12258 s 12 1
Porphyromonas uenonis DSM 23387 = JCM 13868 s 12 1
Dysgonomonas capnocytophagoides DSM 22835 s 12 1
Bacteroides pyogenes DSM 20611 = JCM 6294 s 12 1
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 12 1
Sphingomonas phyllosphaerae FA2 s 12 1
Porphyromonas gulae DSM 15663 s 12 1
Bacteroides fragilis 3_1_12 s 12 1
Bacteroides sp. 1_1_6 s 12 1
Parabacteroides sp. 2_1_7 s 12 1
Bacteroides sp. 2_2_4 s 12 1
Bacteroides sp. 4_3_47FAA s 12 1
Bacteroides sp. 9_1_42FAA s 12 1
Bacteroides sp. D1 s 12 1
Bacteroides sp. D2 s 12 1
Bacteroides dorei 5_1_36/D4 s 12 1
Bacteroides sp. 2_1_22 s 12 1
Bacteroides sp. 2_1_33B s 12 1
Bacteroides sp. 3_1_33FAA s 12 1
Parabacteroides sp. D13 s 12 1
Prevotella buccae D17 s 12 1
Parabacteroides sp. 20_3 s 12 1
Bacteroides sp. 3_1_23 s 12 1
Bacteroides sp. 3_1_40A s 12 1
Bacteroides ovatus 3_8_47FAA s 12 1
Tannerella sp. 6_1_58FAA_CT1 s 12 1
Bacteroides sp. 3_1_19 s 12 1
Bacteroides sp. D22 s 12 1
Bacteroides sp. 1_1_30 s 12 1
Dysgonomonas gadei ATCC BAA-286 s 12 1
Bacteroides caccae CL03T12C61 s 12 1
Bacteroides dorei CL02T00C15 s 12 1
Bacteroides dorei CL02T12C06 s 12 1
Bacteroides dorei CL03T12C01 s 12 1
Bacteroides nordii CL02T12C05 s 12 1
Bacteroides ovatus CL02T12C04 s 12 1
Bacteroides ovatus CL03T12C18 s 12 1
Bacteroides vulgatus CL09T03C04 s 12 1
Bacteroides xylanisolvens CL03T12C04 s 12 1
Parabacteroides distasonis CL03T12C09 s 12 1
Parabacteroides distasonis CL09T03C24 s 12 1
Parabacteroides merdae CL03T12C32 s 12 1
Bacteroides fragilis HMW 610 s 12 1
Bacteroides fragilis HMW 616 s 12 1
Coprobacter fastidiosus NSB1 s 12 1
Porphyromonas gingivalis SJD2 s 12 1
Prevotella sp. oral taxon 317 str. F0108 s 12 1
Parabacteroides sp. D25 s 12 1
Prevotella nigrescens F0103 s 12 1
Bacteroides sp. HPS0048 s 12 1
Porphyromonas gingivalis W83 s 12 1
Bacteroides vulgatus ATCC 8482 s 12 1
Parabacteroides distasonis ATCC 8503 s 12 1
Bacteroides fragilis s 12 1
Bacteroides fragilis s 12 1
Bacteroides fragilis s 12 1
Porphyromonas gingivalis s 12 1
Prevotella sp. FD3004 s 12 1
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 12 1
Prevotella oryzae DSM 17970 s 12 1
Prevotella bivia DNF00188 s 12 1
Bacteroides fragilis s 12 1
Bacteroides fragilis s 12 1
Bacteroides thetaiotaomicron s 12 1
Colwellia psychrerythraea s 12 1
Porphyromonas gingivicanis s 12 1
Prevotella buccae s 12 1
Bacteroides thetaiotaomicron s 12 1
Prevotella bivia s 12 1
Porphyromonas gingivalis s 12 1
Bacteroides ovatus s 12 1
Bacteroides dorei CL03T12C01 s 12 1
Bacteroides ovatus s 12 1
Bacteroides thetaiotaomicron s 12 1
Prevotella bivia s 12 1
Prevotella bivia s 12 1
Bacteroides caecimuris s 12 1
Bacteroides fragilis s 12 1
Bacteroides ovatus s 12 1
Bacteroides fragilis s 12 1
Prevotella enoeca s 12 1
Porphyromonas gingivalis s 12 1
Bacteroides thetaiotaomicron s 12 1
Bacteroides vulgatus s 12 1
Bacteroides xylanisolvens s 12 1
Prevotella ruminicola s 12 1
Prevotella ruminicola s 12 1
Bacteroides caecimuris s 12 1
Bacteroides ovatus s 12 1
Bacteroides ovatus s 12 1
Bacteroides xylanisolvens s 12 1
Prevotella ruminicola s 12 1
Tannerella sp. oral taxon HOT-286 s 12 1
Bacteroides ovatus s 12 1
Bacteroides thetaiotaomicron s 12 1
Bacteroides xylanisolvens s 12 1
Bacteroides xylanisolvens s 12 1
Bacteroides dorei s 12 1
Bacteroides ovatus s 12 1
Parabacteroides distasonis s 12 1
Bacteroides dorei s 12 1
Porphyromonas gingivalis s 12 1

*p=pathogen;s=symbiont